BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019C08LP1|AL427460
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig825 1153 0.0
>3x_Contig825
Length = 2524
Score = 1153 bits (581), Expect = 0.0
Identities = 600/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 1 gtggagcaatgacgacagaatgcactccaatgacaggagaagaatcgtcttgtgtgaaa- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 gtggagcaatgacgacagaatgcactccaatgacaggagaagaatcgtcttgtgtgaaac 1906
Query: 60 tcatgctttcgttggtaataaaagttaattccttggtaccgttttttgggatggggatct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 tcatgctttcgttggtaataaaagttaattccttggtaccgttttttgggatggggatct 1966
Query: 120 tggtaccaaagatatggccaatcaacttttctcccaaaatctcagtgcctttaacgtctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 tggtaccaaagatatggccaatcaacttttctcccaaaatctcagtgcctttaacgtctc 2026
Query: 180 taatgaaaagacccgagctcaattcggggcacatcttcaatctgaattcgatcttctcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 taatgaaaagacccgagctcaattcggggcacatcttcaatctgaattcgatcttctcct 2086
Query: 240 ttccagccctttcttcaggtgggaagccttgtgcctctagctctactgatgcttggcaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 ttccagccctttcttcaggtgggaagccttgtgcctctagctctactgatgcttggcaat 2146
Query: 300 cttctatcgttaatggtctaatataaacatgcagtggcaatgacgatgacatagtgaaaa 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2147 cttctatcgttaatggtctaatataaacatgcagtggcaatgacgatgccatagtgaaaa 2206
Query: 360 ttcttttctgattttataatacttaataatgatttcctaatgttgtttcttcaattctag 419
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 2207 ttcttttctgattttataatacttaaaaaagatttcctaatgttgtttcttcaattctag 2266
Query: 420 ccacaataatacaattatttgctccttattctagtttgcttctaaaatcaatcgaacctt 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 ccacaataatacaattatctgctccttattctagtttgcttctaaaatcaatcgaacctt 2326
Query: 480 attatcaacaatggtattcaactcctagaccaattgattttatcaactagtgttagacag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 attatcaacaatggtattcaactcctagaccaattgattttatcaactagtgttagacag 2386
Query: 540 atatgatgtctttgtgaactgctcaataacggaagtgatagtcttgtgagatgtgtgtct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 atatgatgtctttgtgaactgctcaataacggaagtgatagtcttgtgagatgtgtgtct 2446
Query: 600 atatg 604
|||||
Sbjct: 2447 atatg 2451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7385
Number of Sequences: 1807
Number of extensions: 7385
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)